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Guides

How each calculation works

Each guide covers one calculation: the formula, a worked example, the usual mistakes and the references behind it. Each one links to the calculator that does the arithmetic.

  1. G-01

    How Peptide Molecular Weight Is Calculated

    Why a peptide weighs less than its amino acids added together, how residue masses work, when to use average or monoisotopic mass, and how terminal groups and disulfides change the result.

  2. G-02

    Amino Acid Properties Explained: Charge, pI, Hydropathy and A280

    What the sequence analyzer reports and how to read it: net charge at a given pH, isoelectric point, GRAVY hydropathy and the extinction coefficient at 280 nm, with the limits of each estimate.

  3. G-03

    Peptide Sequence Notation: One-Letter and Three-Letter Codes

    How peptide sequences are written: direction from N- to C-terminus, the 20 one- and three-letter codes, terminal groups like H- and -NH2, and the ambiguous codes that trip up calculators.

  4. G-04

    Moles and Molar Mass: Converting Between Grams and Moles

    The mole, Avogadro’s number and molar mass explained for bench work, with the conversion n = m / M worked through for peptide-scale quantities.

  5. G-05

    Molarity Explained, With Worked Examples

    What molar concentration means, how to rearrange m = c × V × M to find mass, volume or concentration, and the preparation details that keep a solution at the molarity you calculated.

  6. G-06

    The Dilution Equation (C1V1 = C2V2) and Serial Dilutions

    Why C1V1 = C2V2 works, how to solve it for any unknown, what “1:10” really means, and how to plan serial dilutions that stay accurate at small volumes.

  7. G-07

    Concentration Units Explained: M, mg/mL, % w/v and ppm

    How molar and mass-per-volume concentrations relate, why the molecular weight is the bridge between them, and what percentage and ppm really mean for a solution.

  8. G-08

    Metric Mass Prefixes: kg, g, mg, µg, ng and pg

    The metric mass prefixes, how to convert between them without factor-of-1000 slips, how to write micrograms unambiguously, and what your balance can actually weigh.

  9. G-09

    SI Units in the Laboratory: Volume, Amount, Concentration and Length

    The SI base and derived units behind everyday bench quantities, the accepted non-SI units such as the litre and ångström, and the formatting rules that keep values unambiguous.

  10. G-10

    Temperature Scales and Sample Storage

    Celsius, kelvin and Fahrenheit and how they relate, plus the temperature bands used for storing reagents and peptide samples, from room temperature to liquid nitrogen.

  11. G-11

    How to Prepare a Stock Solution

    A bench-level walk-through of stock solution preparation: choosing a concentration, correcting for purity and net peptide content, weighing, dissolving, making up to volume, and aliquoting.

  12. G-12

    Planning a Concentration Series

    How to space concentrations for an experiment (linear, 2-fold, half-log or 10-fold), when to dilute directly or serially, how to keep pipetting volumes accurate, and why the vehicle should stay constant.