Guides
How each calculation works
Each guide covers one calculation: the formula, a worked example, the usual mistakes and the references behind it. Each one links to the calculator that does the arithmetic.
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G-01
How Peptide Molecular Weight Is Calculated
Why a peptide weighs less than its amino acids added together, how residue masses work, when to use average or monoisotopic mass, and how terminal groups and disulfides change the result.
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G-02
Amino Acid Properties Explained: Charge, pI, Hydropathy and A280
What the sequence analyzer reports and how to read it: net charge at a given pH, isoelectric point, GRAVY hydropathy and the extinction coefficient at 280 nm, with the limits of each estimate.
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G-03
Peptide Sequence Notation: One-Letter and Three-Letter Codes
How peptide sequences are written: direction from N- to C-terminus, the 20 one- and three-letter codes, terminal groups like H- and -NH2, and the ambiguous codes that trip up calculators.
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G-04
Moles and Molar Mass: Converting Between Grams and Moles
The mole, Avogadro’s number and molar mass explained for bench work, with the conversion n = m / M worked through for peptide-scale quantities.
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G-05
Molarity Explained, With Worked Examples
What molar concentration means, how to rearrange m = c × V × M to find mass, volume or concentration, and the preparation details that keep a solution at the molarity you calculated.
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G-06
The Dilution Equation (C1V1 = C2V2) and Serial Dilutions
Why C1V1 = C2V2 works, how to solve it for any unknown, what “1:10” really means, and how to plan serial dilutions that stay accurate at small volumes.
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G-07
Concentration Units Explained: M, mg/mL, % w/v and ppm
How molar and mass-per-volume concentrations relate, why the molecular weight is the bridge between them, and what percentage and ppm really mean for a solution.
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G-08
Metric Mass Prefixes: kg, g, mg, µg, ng and pg
The metric mass prefixes, how to convert between them without factor-of-1000 slips, how to write micrograms unambiguously, and what your balance can actually weigh.
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G-09
SI Units in the Laboratory: Volume, Amount, Concentration and Length
The SI base and derived units behind everyday bench quantities, the accepted non-SI units such as the litre and ångström, and the formatting rules that keep values unambiguous.
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G-10
Temperature Scales and Sample Storage
Celsius, kelvin and Fahrenheit and how they relate, plus the temperature bands used for storing reagents and peptide samples, from room temperature to liquid nitrogen.
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G-11
How to Prepare a Stock Solution
A bench-level walk-through of stock solution preparation: choosing a concentration, correcting for purity and net peptide content, weighing, dissolving, making up to volume, and aliquoting.
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G-12
Planning a Concentration Series
How to space concentrations for an experiment (linear, 2-fold, half-log or 10-fold), when to dilute directly or serially, how to keep pipetting volumes accurate, and why the vehicle should stay constant.